PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00236.1_g00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GeBP
Protein Properties Length: 592aa    MW: 65477 Da    PI: 5.7813
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00236.1_g00020.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573354e-11250278230
                   DUF573   2 lfqrlwseeDeivlLqGlidfkaktgksp 30 
                              lfqrlwse+Dei++L+G+id+++k++++p
  Sme2.5_00236.1_g00020.1 250 LFQRLWSEDDEIAILKGMIDYRSKKKADP 278
                              79**********************99876 PP

2HLH26.41.3e-08463507451
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51 
                              ++  rE+ RR+r+N++f eL  ll +    + +K +K+++L  Av+ +
  Sme2.5_00236.1_g00020.1 463 SKACREKLRRERLNDKFMELGALLEPG---RPPKTDKSTVLVDAVRMV 507
                              5678**********************8...89************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.5E-7251278IPR007592Protein of unknown function DUF573
PfamPF045046.1E-7279313IPR007592Protein of unknown function DUF573
PROSITE profilePS5088811.884459510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.99E-5462505No hitNo description
PfamPF000102.8E-6463507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-9463532IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-9464539IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-5465518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MVSPENTNWL YDYGFEDSSI PDSNFSASAS GFSWPVQNLN GSRNVQSPAE TKTLGDFFSS  60
VLVWWTELPG IYCCDKHPVE LVEMAKNHPE EEEGESGEEM EVSSPEKADT ESDSELELKS  120
EPEQEQPPKK PPVAALKKPL PQDSSSSTEE ESDSESEPET QKPNPVVKPI ASKPMDEPKK  180
VAPTAEKKPR SKADATAKFI SPKKSAPVVG AKRPVDDGEA KESKRSKKKP EKEIETPVKK  240
TPTDDVKRQL FQRLWSEDDE IAILKGMIDY RSKKKADPEK YENNAGKEKK GKERTFSKPH  300
EQKGYELSQK IWGKEKSDKV QDAVVKMKNV TSSKGQSNSG SKDIGVLIVA KEGKLSTEVE  360
KTMEVTPNLS LISCGGSVAA LEKWLDEYSG LLSAEKRNEI KEKSTSLKVT EAGLCLRRVN  420
LIAEQGELMP NSEIDGSIGE SDYPKESGSK KRARVESCAP SSSKACREKL RRERLNDKFM  480
ELGALLEPGR PPKTDKSTVL VDAVRMVEKT ELRDEKHRLK AEKEKLEQQL KTTSAPPSFL  540
PPPIPAPFAA PGQFPGSKLV PIMSYPGVAM WQFMPPAAVD TSQDHVLRPP VA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755161e-167HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363288.11e-145PREDICTED: mediator-associated protein 1-like
TrEMBLM1D1F71e-145M1D1F7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000792151e-145(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30421947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.18e-52bHLH family protein